I've been playing around with my 'print packets' which you can customize in the Print options (the button to change them is way down at the bottom of the window). A lot of the 'default' settings aren't what I want, so I've been working at changing them to 'never', like for the W-2 worksheet. Using these packets (you can set them differently for client, filing, preparer, and custom) should get rid of the continual unchecking of boxes for stuff that ATX set as default to print, but I never wanted a copy of. I'm finding a lot of neat worksheets & stuff, like the tax summary, that I never knew were there.
One issue is that the 'federal copy for state filing' is a default setting to print and I haven't been able to get that default setting changed, so I have to remember to uncheck that if I don't want it.